PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g076270.1
Common NameMTR_5g076270
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARF
Protein Properties Length: 842aa    MW: 93282.7 Da    PI: 6.3571
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g076270.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.82.1e-23128229199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++
  Medtr5g076270.1 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WN 217
                      99*****************************8544444..48************************************************..88 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++ +l+++++r+
  Medtr5g076270.1 218 EKNQLLLGIRRA 229
                      99999****997 PP

2Auxin_resp118.36.3e-39254337183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaa+t+s F+v++nPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++++sd+dpvrWpnS+Wrs+k
  Medtr5g076270.1 254 AAHAAATNSCFTVFFNPRASPSEFVIPLSKYIKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITSISDMDPVRWPNSHWRSVK 337
                      79*********************************9789******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-49112257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-42121243IPR015300DNA-binding pseudobarrel domain
CDDcd100172.58E-21127228No hitNo description
PROSITE profilePS5086312.379128230IPR003340B3 DNA binding domain
SMARTSM010193.1E-24128230IPR003340B3 DNA binding domain
PfamPF023621.2E-21128229IPR003340B3 DNA binding domain
PfamPF065076.1E-34254337IPR010525Auxin response factor
PfamPF023093.5E-8707799IPR033389AUX/IAA domain
SuperFamilySSF542774.56E-7711789No hitNo description
PROSITE profilePS5174524.483715799IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 842 aa     Download sequence    Send to blast
MKLSTSGMSQ QGHEGGEKKC LNSELWHACA GPLVSLPTAG TRVVYFPQGH SEQVSATTNR  60
EIDGQIPNYP SLPPQLICQL HNVTMHADVE TDEVYAQMTL QPLTPQEQKD TFLPMELGIP  120
SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDLHDVEWKF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAS RPQTVMPSSV  240
LSSDSMHIGL LAAAAHAAAT NSCFTVFFNP RASPSEFVIP LSKYIKAVYH TRVSVGMRFR  300
MLFETEESSV RRYMGTITSI SDMDPVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL  360
TTFPMYPSLF PLRLKRPWHP GTSSFLDGRD EATNGLMWMR GGPGDHGLNA MNFQGAGLLP  420
WMQPRLDPTL LGNDHNQQYQ AMLAAAGLQN QGNVDLLRQQ MMNFQQPFNY QQSGNLSPMQ  480
LQQQQAIQQS VSTNNIMQPQ GQGLAENLSQ HILQKSHNNR ENQTQQHSYQ DSVLIQGDPL  540
HQKQHSSLPS PSYTKPDFID SGMKFTASVS PGQNMLGSLS SEGSGNLLNL SRSGHSMLTE  600
QSPQQSWASK YSPSQVDAIG NSMSHVQYSG RDTSIVPPHC SSDAQNSVLF GVNIDSSGLL  660
LPTTVPRYTT ASAHADASTM PLGESSFQGS PYPCMQDSSE LLQSAGQVDA QNQTPIFVKV  720
YKSGSVGRSL DISRFNSYHE LREELAQMFG IEGKFEDPLR SGWQLVFVDR ENDVLLLGDD  780
PWESFVNNVW YIKILSPEDI QKMGEEAIES LGPSSGQRMN NTGAESHDIV SGLPSLGSLE  840
Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1591535845388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.77560.0leaf| pod| root| stem
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00033PBMTransfer from AT5G37020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU3263930.0CU326393.2 Medicago truncatula chromosome 5 clone mth4-5l6, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003616115.10.0auxin response factor 2
SwissprotQ9FGV10.0ARFH_ARATH; Auxin response factor 8
TrEMBLG7KFN60.0G7KFN6_MEDTR; Auxin response factor
STRINGGLYMA02G40650.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49582850
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0auxin response factor 8
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]